STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ11952.1Signal transduction histidine kinase. (488 aa)    
Predicted Functional Partners:
SHJ11920.1
Two component transcriptional regulator, winged helix family.
 0.988
SHJ15921.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.956
SHI77014.1
PAS/PAC sensor hybrid histidine kinase.
 
 
0.953
SHI68616.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.952
SHJ14006.1
Two-component system, OmpR family, response regulator VicR.
 0.952
SHI89857.1
Two-component system, OmpR family, response regulator VicR.
 0.947
SHI84412.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.946
SHI62736.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 0.943
SHJ34505.1
Two-component system, OmpR family, response regulator VanR.
 0.941
SHI81038.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.939
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.