STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ14123.1Phosphoribosyl 1,2-cyclic phosphodiesterase. (264 aa)    
Predicted Functional Partners:
SHJ14082.1
YycH protein.
  
  
 0.772
SHJ14063.1
Two-component signal transduction system YycFG, regulatory protein YycH.
  
  
 0.723
SHJ14143.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
  
  
 0.641
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.629
SHI59524.1
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
  
 0.608
rlmH
23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
     0.590
SHJ14024.1
Two-component system, OmpR family, sensor histidine kinase VicK.
  
  
 0.525
SHI59275.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.463
SHI57539.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
   
  
 0.456
SHJ14006.1
Two-component system, OmpR family, response regulator VicR.
  
  
 0.447
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.