STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ18745.1Cobaltochelatase CobN. (91 aa)    
Predicted Functional Partners:
SHJ18693.1
Magnesium chelatase subunit D.
  
 0.944
SHJ18701.1
Magnesium chelatase subunit I.
  
 
 0.806
cbiA
Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
 
 0.786
SHI67731.1
precorrin-6Y C5,15-methyltransferase (decarboxylating).
  
  
 0.776
SHJ18857.1
cob(I)alamin adenosyltransferase.
    
 0.744
SHJ18801.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.647
SHJ18763.1
Adenosylcobinamide amidohydrolase.
       0.629
SHJ18780.1
Iron complex transport system ATP-binding protein.
  
    0.621
SHJ31888.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
 
 0.601
SHJ08098.1
N-terminal double-transmembrane domain-containing protein.
  
 0.600
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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