STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ20225.1Type I restriction enzyme, S subunit. (393 aa)    
Predicted Functional Partners:
SHJ20245.1
Type I restriction enzyme M protein.
 
 0.999
SHJ20209.1
Type I restriction enzyme, R subunit.
 
 
 0.991
SHJ22722.1
N-6 DNA Methylase.
 
 
 0.976
SHJ42420.1
Eco57I restriction-modification methylase.
 
 
 0.964
SHJ43371.1
Hypothetical protein.
  
 
 0.959
SHJ39492.1
N-6 DNA Methylase.
 
 
 0.952
SHJ43354.1
Adenine-specific DNA-methyltransferase.
  
 
 0.946
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.787
SHJ21063.1
AAA domain-containing protein, putative AbiEii toxin, Type IV TA system.
  
  
 0.749
SHJ22279.1
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains.
  
  
 0.749
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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