SHJ21110.1 protein (Lutispora thermophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHJ21110.1

AAA domain-containing protein. (551 aa)

Predicted Functional Partners:

SHJ21161.1

0.988

SHJ21133.1

0.984

SHJ21085.1

0.952

SHJ22141.1

0.950

SHJ22116.1

0.932

SHJ22071.1

0.800

SHI71159.1

0.671

SHI71177.1

0.671

SHJ37045.1

0.671

SHJ39801.1

0.671

Your Current Organism:

Lutispora thermophila

NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHI71159.1	SHI71177.1	SAMN02745176_01131	SAMN02745176_01132	Hypothetical protein.	Integrase core domain-containing protein.	0.899
SHI71159.1	SHJ21110.1	SAMN02745176_01131	SAMN02745176_02797	Hypothetical protein.	AAA domain-containing protein.	0.671
SHI71177.1	SHI71159.1	SAMN02745176_01132	SAMN02745176_01131	Integrase core domain-containing protein.	Hypothetical protein.	0.899
SHI71177.1	SHJ21110.1	SAMN02745176_01132	SAMN02745176_02797	Integrase core domain-containing protein.	AAA domain-containing protein.	0.671
SHJ21085.1	SHJ21110.1	SAMN02745176_02796	SAMN02745176_02797	TniQ protein.	AAA domain-containing protein.	0.952
SHJ21085.1	SHJ21133.1	SAMN02745176_02796	SAMN02745176_02798	TniQ protein.	Mu transposase, C-terminal.	0.951
SHJ21085.1	SHJ21161.1	SAMN02745176_02796	SAMN02745176_02799	TniQ protein.	TnsA endonuclease N terminal.	0.954
SHJ21085.1	SHJ22116.1	SAMN02745176_02796	SAMN02745176_02812	TniQ protein.	Mu transposase, C-terminal.	0.793
SHJ21085.1	SHJ22141.1	SAMN02745176_02796	SAMN02745176_02813	TniQ protein.	TnsA endonuclease N terminal.	0.808
SHJ21110.1	SHI71159.1	SAMN02745176_02797	SAMN02745176_01131	AAA domain-containing protein.	Hypothetical protein.	0.671
SHJ21110.1	SHI71177.1	SAMN02745176_02797	SAMN02745176_01132	AAA domain-containing protein.	Integrase core domain-containing protein.	0.671
SHJ21110.1	SHJ21085.1	SAMN02745176_02797	SAMN02745176_02796	AAA domain-containing protein.	TniQ protein.	0.952
SHJ21110.1	SHJ21133.1	SAMN02745176_02797	SAMN02745176_02798	AAA domain-containing protein.	Mu transposase, C-terminal.	0.984
SHJ21110.1	SHJ21161.1	SAMN02745176_02797	SAMN02745176_02799	AAA domain-containing protein.	TnsA endonuclease N terminal.	0.988
SHJ21110.1	SHJ22071.1	SAMN02745176_02797	SAMN02745176_02810	AAA domain-containing protein.	TniQ protein.	0.800
SHJ21110.1	SHJ22116.1	SAMN02745176_02797	SAMN02745176_02812	AAA domain-containing protein.	Mu transposase, C-terminal.	0.932
SHJ21110.1	SHJ22141.1	SAMN02745176_02797	SAMN02745176_02813	AAA domain-containing protein.	TnsA endonuclease N terminal.	0.950
SHJ21110.1	SHJ37045.1	SAMN02745176_02797	SAMN02745176_03368	AAA domain-containing protein.	Putative transposase.	0.671
SHJ21110.1	SHJ39801.1	SAMN02745176_02797	SAMN02745176_03451	AAA domain-containing protein.	Putative transposase.	0.671
SHJ21133.1	SHJ21085.1	SAMN02745176_02798	SAMN02745176_02796	Mu transposase, C-terminal.	TniQ protein.	0.951