STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ38591.1Helix-turn-helix domain-containing protein. (80 aa)    
Predicted Functional Partners:
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.740
SHJ26320.1
Hypothetical protein.
  
    0.593
SHJ17281.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg.
    
 0.537
SHJ39382.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
 0.537
SHI43046.1
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
     
 0.518
SHJ26249.1
Protein of unknown function.
 
     0.514
SHI69179.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.509
SHJ21857.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg.
  
 
  0.509
SHJ31869.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.509
SHJ40052.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.509
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.