STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ44049.1Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. (462 aa)    
Predicted Functional Partners:
SHI40260.1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
  
 0.999
SHI66640.1
NADPH-dependent glutamate synthase beta chain.
 
 
 0.999
SHI68997.1
4Fe-4S binding domain-containing protein.
  
 0.999
SHI69179.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
 
0.999
SHI84574.1
NADH-quinone oxidoreductase subunit G.
  
 0.999
SHI84596.1
4Fe-4S dicluster domain-containing protein.
  
 0.999
SHI84622.1
NADH-quinone oxidoreductase subunit F.
  
 0.999
SHJ00366.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
  
 0.999
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 0.999
SHJ01915.1
NADH-quinone oxidoreductase subunit F.
  
 0.999
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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