STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA07867.1Rhs element Vgr protein. (991 aa)    
Predicted Functional Partners:
SKA22799.1
Type VI secretion system secreted protein Hcp.
 
  
 0.926
SKA22824.1
Type VI secretion system protein ImpH.
 
 
 0.923
SKA22767.1
Type VI secretion system protein ImpB.
 
  
 0.918
SJZ94116.1
Type VI secretion system protein ImpA.
 
  
 0.915
SKA22738.1
Type VI secretion system protein ImpK.
 
  
 0.861
SKA22775.1
Type VI secretion system protein ImpC.
 
  
 0.855
SKA22810.1
Type VI secretion system protein ImpF.
 
  
 0.853
SKA22752.1
Type VI secretion system protein VasD.
 
  
 0.833
SKA22815.1
Type VI secretion system protein ImpG.
 
  
 0.826
SKA22744.1
Type VI secretion system protein ImpJ.
 
  
 0.810
Your Current Organism:
Lysobacter spongiicola
NCBI taxonomy Id: 1122188
Other names: L. spongiicola DSM 21749, Lysobacter spongiicola DSM 21749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.