STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI46596.1Type IV pilus assembly protein PilC. (402 aa)    
Predicted Functional Partners:
SHI46561.1
Type IV pilus assembly protein PilB.
 
 0.988
SHI69548.1
Type IV pilus assembly protein PilB.
 
 0.946
SHI92355.1
General secretion pathway protein E.
 
 0.946
SHJ67092.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
 
 0.946
SHJ78866.1
MSHA biogenesis protein MshE.
 
 0.946
SHI46410.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
 
 
 
 0.903
SHI46470.1
Pilus assembly protein, PilO.
   
 
 0.903
SHI46528.1
Type IV pilus assembly protein PilM.
   
 
 0.900
SHI57854.1
Type IV pilus assembly protein PilB.
 
 
 0.877
SHJ69701.1
Type II secretion system (T2SS), protein E, N-terminal domain.
 
 
 0.871
Your Current Organism:
Malonomonas rubra
NCBI taxonomy Id: 1122189
Other names: M. rubra DSM 5091, Malonomonas rubra DSM 5091
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.