STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ56866.1Right handed beta helix region. (527 aa)    
Predicted Functional Partners:
SHJ30493.1
DNA translocase FtsK.
    
 
 0.698
SHJ18754.1
Delta-60 repeat domain-containing protein.
  
 0.692
SHI48140.1
Iron complex outermembrane recepter protein.
    
 
 0.683
SHJ09904.1
Serine protease.
  
 0.678
SHJ39196.1
Hypothetical protein.
  
 0.678
SHK00103.1
PEP-CTERM protein-sorting domain-containing protein.
  
 0.678
SHJ56897.1
Plasmid maintenance system antidote protein, XRE family.
       0.651
SHJ56589.1
Right handed beta helix region.
      0.633
SHI61103.1
RNA polymerase sigma-70 factor, ECF subfamily.
    
  0.605
SHI94974.1
Hypothetical protein.
    
 
 0.604
Your Current Organism:
Malonomonas rubra
NCBI taxonomy Id: 1122189
Other names: M. rubra DSM 5091, Malonomonas rubra DSM 5091
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.