STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ62331.1Transposase. (174 aa)    
Predicted Functional Partners:
SHJ62296.1
Transposase InsO and inactivated derivatives.
 
     0.935
SHI99738.1
Integrase core domain-containing protein.
 
     0.779
SHJ99237.1
Transposase InsO and inactivated derivatives.
 
     0.779
SHJ99668.1
Integrase core domain-containing protein.
 
     0.779
SHJ62400.1
Helix-turn-helix domain-containing protein.
 
     0.561
SHJ62371.1
Serine/threonine-protein kinase HipA.
 
     0.550
SHJ72796.1
acetyl-CoA synthetase.
  
  
 0.409
Your Current Organism:
Malonomonas rubra
NCBI taxonomy Id: 1122189
Other names: M. rubra DSM 5091, Malonomonas rubra DSM 5091
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.