STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ67843.1Transcriptional regulator, XRE family. (83 aa)    
Predicted Functional Partners:
SHJ67815.1
Serine/threonine-protein kinase HipA.
 
 
 0.986
SHJ62371.1
Serine/threonine-protein kinase HipA.
 
 
 0.938
SHJ73464.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.792
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.746
SHI77315.1
HipA-like N-terminal domain-containing protein.
 
 
 0.607
SHJ68085.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.493
SHI58005.1
Tetratricopeptide repeat-containing protein.
     
 0.425
SHI78951.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
 
 0.417
SHJ67879.1
Transketolase; Belongs to the transketolase family.
     
 0.407
SHJ85267.1
PAS domain S-box-containing protein.
    
 0.404
Your Current Organism:
Malonomonas rubra
NCBI taxonomy Id: 1122189
Other names: M. rubra DSM 5091, Malonomonas rubra DSM 5091
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.