STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ70862.1Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. (551 aa)    
Predicted Functional Partners:
SHJ70891.1
Haloalkane dehalogenase.
 
 0.997
SHJ71002.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
 
 0.997
SHJ70966.1
PfaB family protein.
 
 0.990
SHJ70924.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
  
 0.977
SHJ70836.1
Nucleoside-diphosphate-sugar epimerase.
 
 0.970
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.939
SHJ72665.1
Acyl carrier protein.
 
 0.872
SHJ20743.1
Glyoxylase, beta-lactamase superfamily II.
    
 0.863
SHJ72796.1
acetyl-CoA synthetase.
 
0.863
SHJ71036.1
PfaD family protein.
 
  
 0.862
Your Current Organism:
Malonomonas rubra
NCBI taxonomy Id: 1122189
Other names: M. rubra DSM 5091, Malonomonas rubra DSM 5091
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