STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA12708.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
SKA30969.1
Adenylate cyclase, class 2.
  
  
  0.653
SKA25790.1
ATP-dependent DNA helicase, Rep family.
    
   0.652
SKA25700.1
Alpha/beta hydrolase.
    
   0.631
SJZ39525.1
Mannose-1-phosphate guanylyltransferase / phosphomannomutase.
  
 0.580
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.555
SKA35337.1
Maltooligosyl trehalose hydrolase.
   
 0.537
SKA35778.1
Hypothetical protein.
   
  0.524
SJZ42308.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
    
 0.494
SKA26539.1
Starch phosphorylase.
   
 0.466
SKA12693.1
Pyruvate dehydrogenase (quinone); Belongs to the TPP enzyme family.
       0.445
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.