STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA17743.1Tight adherence protein B. (309 aa)    
Predicted Functional Partners:
SKA17701.1
Pilus assembly protein CpaE.
 
  
 0.980
SKA17756.1
Tight adherence protein C.
 
  
 0.980
SKA17728.1
Pilus assembly protein CpaF.
 
  
 0.968
SKA17688.1
Pilus assembly protein CpaB.
  
  
 0.871
SKA00903.1
Pilus assembly protein, ATPase of CpaF family.
 
  
 0.865
SKA34560.1
Pilus assembly protein CpaF.
 
  
 0.865
SKA17769.1
Signal transduction histidine kinase.
 
     0.717
SKA17710.1
TadE-like protein.
       0.694
SKA17680.1
Hypothetical protein.
       0.676
SKA17780.1
Two component transcriptional regulator, LuxR family.
       0.664
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.