STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA19894.1Ferredoxin. (63 aa)    
Predicted Functional Partners:
SKA31503.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.801
SKA19871.1
NAD(P)H-nitrite reductase.
 
  
 0.555
SJZ64050.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
     0.514
SKA19902.1
Prolyl aminopeptidase Serine peptidase. MEROPS family S33; Belongs to the peptidase S33 family.
       0.490
SJZ94758.1
Assimilatory nitrate reductase (NADH) beta subunit.
    
 0.479
SKA26314.1
PPOX class probable F420-dependent enzyme.
 
     0.462
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.
  
     0.440
SJZ53455.1
Stress responsive A/B Barrel Domain.
  
     0.437
whiB-3
WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.430
whiB-6
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.411
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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