STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA22791.1Nucleotide-binding universal stress protein, UspA family. (314 aa)    
Predicted Functional Partners:
SKA22784.1
Amino acid/polyamine/organocation transporter, APC superfamily.
  
    0.801
SJZ36922.1
Dimethylargininase.
 
  
 0.788
SKA22779.1
Carbamate kinase; Belongs to the carbamate kinase family.
  
    0.522
SKA22772.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
  
    0.514
SJZ87695.1
DNA-binding transcriptional regulator, MarR family.
 
   
 0.485
SKA37566.1
GAF sensor hybrid histidine kinase.
  
  
 0.471
SKA17146.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.449
hpf
SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.419
SKA34794.1
PAS/PAC sensor signal transduction histidine kinase.
 
  
 0.414
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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