STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA24020.1Protein of unknown function. (192 aa)    
Predicted Functional Partners:
SKA24011.1
Ribonuclease D.
 
    0.894
SKA24057.1
Chlorite dismutase.
 
     0.766
SKA23509.1
Protein of unknown function.
  
     0.760
SKA29271.1
Protein of unknown function.
  
     0.753
SJZ39497.1
Predicted transcriptional regulators.
  
     0.738
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.736
SJZ64677.1
Protein of unknown function.
  
     0.715
SJZ64423.1
Protein of unknown function.
  
     0.711
SJZ46798.1
Clathrin adaptor complex, small subunit.
  
     0.703
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.685
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.