STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA29178.1Glutamate or tyrosine decarboxylase. (569 aa)    
Predicted Functional Partners:
SJZ44928.1
Glutamate synthase (NADH) large subunit.
     
 0.944
SKA39974.1
Acyl transferase domain-containing protein.
  
 
 0.930
SKA37510.1
Diaminobutyrate aminotransferase apoenzyme; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.838
SKA30713.1
Phosphopantetheine attachment site.
  
 
 0.803
SJZ43867.1
Amino acid adenylation domain-containing protein/natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
    
 0.794
SKA29181.1
Hypothetical protein.
       0.773
SKA22339.1
Histidine ammonia-lyase.
     
 0.768
SKA31152.1
L-aspartate oxidase /nicotinate-nucleotide pyrophosphorylase [carboxylating]; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
  0.763
SKA40021.1
Polyketide synthase 12.
  
 
 0.757
pheA
Prephenate dehydratase.
    
  0.756
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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