STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA34715.1Hypothetical protein. (428 aa)    
Predicted Functional Partners:
SKA33402.1
Hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
  
     0.749
SKA00724.1
Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.716
SKA10400.1
Hypothetical protein.
  
     0.678
SJZ64234.1
Regulatory protein, luxR family.
  
     0.629
SJZ94369.1
Dihydroorotase and related cyclic amidohydrolases.
  
     0.622
SKA10345.1
Type VII secretion integral membrane protein EccD.
  
     0.590
SJZ91702.1
Methyltransferase domain-containing protein.
  
     0.586
SKA31283.1
Protein of unknown function.
  
     0.539
SJZ47011.1
SseB protein N-terminal domain-containing protein.
  
     0.524
SKA34718.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
       0.501
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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