STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA37674.14-carboxymuconolactone decarboxylase. (199 aa)    
Predicted Functional Partners:
SKA37670.1
Hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.661
SJZ57909.1
4-carboxymuconolactone decarboxylase.
    
 0.641
SJZ57996.1
3-carboxy-cis,cis-muconate cycloisomerase.
     
 0.618
SKA12371.1
3-carboxy-cis,cis-muconate cycloisomerase.
     
 0.618
SKA37680.1
Uncharacterized membrane protein HdeD, DUF308 family.
       0.509
SJZ79837.1
Cytochrome P450 / NADPH-cytochrome P450 reductase.
  
    0.489
SKA10585.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
  
  0.443
SJZ35941.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
  
     0.428
SJZ39534.1
CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
      0.420
SJZ87765.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
  
  0.418
Your Current Organism:
Marinactinospora thermotolerans
NCBI taxonomy Id: 1122192
Other names: M. thermotolerans DSM 45154, Marinactinospora thermotolerans DSM 45154
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