STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addBDNA helicase/exodeoxyribonuclease V, subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. (1165 aa)    
Predicted Functional Partners:
addA
DNA helicase/exodeoxyribonuclease V, subunit A; ATP-dependent DNA helicase.
 
 
 0.995
SDW06276.1
ATP-dependent helicase/nuclease subunit A; ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
 
 0.916
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.851
SDW15050.1
Exonuclease SbcC.
 
  
 0.839
SDW24936.1
tRNA (adenine22-N1)-methyltransferase.
 
     0.657
SDW13793.1
Hypothetical protein.
  
     0.510
SDW15150.1
Hypothetical protein.
       0.480
SDW65516.1
Putative GTP pyrophosphokinase.
  
     0.460
SDW96413.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.439
SDW26821.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.419
Your Current Organism:
Marinococcus luteus
NCBI taxonomy Id: 1122204
Other names: CCTCC AA 208014, DSM 23126, KCTC 13214, M. luteus, Marinococcus luteus Wang et al. 2009, YIM 91094
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