STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW55556.1Protein of unknown function. (394 aa)    
Predicted Functional Partners:
SDW55522.1
Sugar phosphate isomerase/epimerase.
 
     0.951
SDW55580.1
Predicted dehydrogenase.
 
     0.946
SDW55474.1
Predicted dehydrogenase.
 
     0.799
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
 
 0.775
asd
Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.743
SDW55498.1
Predicted dehydrogenase.
 
     0.735
SDW93267.1
Homoserine dehydrogenase.
  
 
 0.704
SDW55607.1
Transcriptional regulator, AraC family.
 
     0.657
SDW55302.1
L-rhamnose isomerase / sugar isomerase.
 
     0.633
SDW55328.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
    0.621
Your Current Organism:
Marinococcus luteus
NCBI taxonomy Id: 1122204
Other names: CCTCC AA 208014, DSM 23126, KCTC 13214, M. luteus, Marinococcus luteus Wang et al. 2009, YIM 91094
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