STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETX11604.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)    
Predicted Functional Partners:
ETX12365.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.999
ETX09594.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.999
ETX09546.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
0.999
ETX11666.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
0.999
ETX11089.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.999
ETX12093.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.998
ETX12693.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
0.997
ETX10688.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
0.997
ETX11273.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
ETX12681.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.988
Your Current Organism:
Marinomonas ushuaiensis
NCBI taxonomy Id: 1122207
Other names: M. ushuaiensis DSM 15871, Marinomonas ushuaiensis DSM 15871
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.