STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribB3,4-dihydroxy-2-butanone 4-phosphate synthase. (224 aa)    
Predicted Functional Partners:
ribH_2
6,7-dimethyl-8-ribityllumazine synthase.
 
 
 0.999
ribD2
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase.
 
 0.983
GCA_000711905_00511
Hypothetical protein.
       0.854
ndk
Nucleoside diphosphate kinase.
  
  0.779
trpF
N-(5'-phosphoribosyl)anthranilate isomerase.
    
 0.770
cheY
Chemotaxis protein CheY.
  
 0.762
moaA_2
GTP 3',8-cyclase.
    
 0.732
folE2
GTP cyclohydrolase FolE2.
    
 0.730
bepA
Beta-barrel assembly-enhancing protease.
    
  0.721
mcp2
Methyl-accepting chemotaxis protein 2.
    
  0.720
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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