STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemE_2Uroporphyrinogen decarboxylase. (417 aa)    
Predicted Functional Partners:
GCA_000711905_00648
Hypothetical protein.
 
  
 0.931
GCA_000711905_01530
Hypothetical protein.
 
  
 0.896
GCA_000711905_01531
Hypothetical protein.
    
 0.883
csmI
Chlorosome protein I.
 
  
 0.852
metH_2
Methionine synthase.
 
 
 0.843
GCA_000711905_00776
Hypothetical protein.
  
 
 0.835
GCA_000711905_00649
Hypothetical protein.
  
  
 0.772
hemC
Porphobilinogen deaminase.
  
 0.753
bchI
Magnesium-chelatase 38 kDa subunit.
  
  
 0.734
mepA_2
Multidrug export protein MepA.
 
  
 0.645
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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