STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speHS-adenosylmethionine decarboxylase proenzyme. (136 aa)    
Predicted Functional Partners:
speB
Agmatinase.
    
 0.886
bpsA
N(4)-bis(aminopropyl)spermidine synthase.
 
     0.884
lysA
Diaminopimelate decarboxylase.
    
 0.884
GCA_000711905_00281
S-methyl-5'-thioinosine phosphorylase.
    
 0.812
mat
S-adenosylmethionine synthase.
  
  
 0.787
argD
Acetylornithine aminotransferase.
    
 0.757
rsmA_2
Ribosomal RNA small subunit methyltransferase A.
    
 0.748
rmlD_1
dTDP-4-dehydrorhamnose reductase.
     
 0.662
rmlD_2
dTDP-4-dehydrorhamnose reductase.
     
 0.662
mtaD_1
5-methylthioadenosine/S-adenosylhomocysteine deaminase.
  
 
  0.616
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.