STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctaB_1Protoheme IX farnesyltransferase. (301 aa)    
Predicted Functional Partners:
albA
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
 
     0.889
GCA_000711905_01044
Hypothetical protein.
 
     0.776
GCA_000711905_01340
Homogentisate phytyltransferase.
 
  
 
0.758
ecdB
Putative UbiX-like flavin prenyltransferase.
  
  
  0.756
GCA_000711905_01045
Hypothetical protein.
       0.755
ispB
Octaprenyl diphosphate synthase.
  
  
  0.747
GCA_000711905_00077
Hypothetical protein.
 
  
  0.735
GCA_000711905_00666
(2E,6E)-farnesyl diphosphate synthase.
  
  
  0.658
GCA_000711905_00075
Geranylgeranylglyceryl phosphate synthase.
  
  
  0.645
dnrF
Aklavinone 12-hydroxylase DnrF.
 
  
  0.470
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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