STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc_2Chromosome partition protein Smc. (325 aa)    
Predicted Functional Partners:
GCA_000711905_01117
Hypothetical protein.
       0.773
glyA
Serine hydroxymethyltransferase.
    
  0.640
proS_2
Proline--tRNA ligase.
  
     0.596
GCA_000711905_01181
Hypothetical protein.
 
     0.534
ligB
DNA ligase B.
       0.532
GCA_000711905_00359
Hypothetical protein.
  
     0.528
GCA_000711905_01375
Hypothetical protein.
 
   
 0.513
tetA
Tetracycline resistance protein, class B.
       0.503
topA
DNA topoisomerase 1.
 
     0.493
GCA_000711905_00360
Hypothetical protein.
  
     0.491
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.