STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000711905_01235Hypothetical protein. (108 aa)    
Predicted Functional Partners:
GCA_000711905_01238
Iron-sulfur cluster carrier protein.
 
  
 0.949
GCA_000711905_01237
Iron-sulfur cluster carrier protein.
 
  
 0.946
GCA_000711905_01239
Hypothetical protein.
 
     0.903
GCA_000711905_01236
Hypothetical protein.
       0.746
GCA_000711905_01234
Hypothetical protein.
 
     0.635
nifH1
Nitrogenase iron protein 1.
  
  
 0.611
apbC
Iron-sulfur cluster carrier protein.
  
  
 0.565
GCA_000711905_00414
Hypothetical protein.
 
     0.543
nifD
Nitrogenase molybdenum-iron protein alpha chain.
  
  
 0.495
GCA_000711905_00636
S-adenosyl-L-methionine-binding protein.
       0.435
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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