STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtN_1Dehydrosqualene desaturase. (543 aa)    
Predicted Functional Partners:
bchI
Magnesium-chelatase 38 kDa subunit.
 
 
 0.961
acr3_3
Arsenical-resistance protein Acr3.
       0.773
GCA_000711905_01340
Homogentisate phytyltransferase.
 
 
 0.755
crtI
Phytoene desaturase (lycopene-forming).
  
     0.662
gbsA
Betaine aldehyde dehydrogenase.
  
 
 0.596
GCA_000711905_01344
Putative glycosyltransferase.
 
  
 0.572
gabP
GABA permease.
       0.568
dnrF
Aklavinone 12-hydroxylase DnrF.
 
 
 0.556
icaA
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
    
 0.553
GCA_000711905_00776
Hypothetical protein.
  
 
 0.548
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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