STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabPGABA permease. (475 aa)    
Predicted Functional Partners:
nhaP2
K(+)/H(+) antiporter NhaP2.
   
 
 0.936
GCA_000711905_01302
Hypothetical protein.
  
 0.837
GCA_000711905_00690
Putative sphingosine-1-phosphate lyase.
  
 
 0.742
truB
tRNA pseudouridine synthase B.
   
 0.722
gbsA
Betaine aldehyde dehydrogenase.
  
 0.696
gatA
Glutamyl-tRNA(Gln) amidotransferase subunit A.
  
 0.693
pheA_1
P-protein.
    
 0.671
nadK
NAD kinase.
  
 0.664
nadE
NH(3)-dependent NAD(+) synthetase.
    
 0.647
fba
Fructose-bisphosphate aldolase.
    
 0.645
Your Current Organism:
Methermicoccus shengliensis
NCBI taxonomy Id: 1122233
Other names: M. shengliensis DSM 18856, Methermicoccus shengliensis DSM 18856
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