STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000620105_00900Unannotated protein. (369 aa)    
Predicted Functional Partners:
GCA_000620105_00899
Unannotated protein.
    0.963
GCA_000620105_00901
Unannotated protein.
    0.963
GCA_000620105_00902
Unannotated protein.
 
     0.948
GCA_000620105_00897
Unannotated protein.
 
    0.944
GCA_000620105_00896
Unannotated protein.
 
    0.910
GCA_000620105_00905
Unannotated protein.
 
    0.886
DAI18_01555
Unannotated protein.
 
    0.869
DAI18_01575
Unannotated protein.
    0.869
DAI18_01565
Unannotated protein.
    0.841
GCA_000620105_00977
Unannotated protein.
 
   
 0.797
Your Current Organism:
Microvirgula aerodenitrificans
NCBI taxonomy Id: 1122240
Other names: M. aerodenitrificans DSM 15089, Microvirgula aerodenitrificans DSM 15089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.