STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC51972.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (283 aa)    
Predicted Functional Partners:
SFC51956.1
Transposase zinc-binding domain-containing protein.
     0.955
SFB91872.1
Transposase zinc-binding domain-containing protein.
     0.810
SFC45884.1
Transposase zinc-binding domain-containing protein.
     0.810
SFB79948.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
   
 0.661
SFB99565.1
Phosphate acetyltransferase.
   
 0.518
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
  
    0.468
SFC50097.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
  
 0.451
SFC15744.1
Adenine phosphoribosyltransferase.
   
    0.446
SFB79833.1
comF family protein.
   
    0.439
SFB89746.1
Hypothetical protein.
   
    0.439
Your Current Organism:
Marinospirillum celere
NCBI taxonomy Id: 1122252
Other names: DSM 18438, LMG 24610, LMG:24610, M. celere, Marinospirillum celere Namsaraev et al. 2009, VKM 2416, strain v1c_Sn-red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.