SFB97510.1 protein (Marinospirillum celere) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFB97510.1

HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant). (401 aa)

Predicted Functional Partners:

SFB88588.1

0.787

SFB97498.1

0.734

SFC03020.1

0.679

SFC33546.1

0.633

SFB79208.1

0.626

SFC12379.1

0.622

SFC41581.1

0.609

SFC31150.1

0.604

SFC41605.1

0.600

SFB97471.1

0.591

Your Current Organism:

Marinospirillum celere

NCBI taxonomy Id: 1122252
Other names: DSM 18438, LMG 24610, LMG:24610, M. celere, Marinospirillum celere Namsaraev et al. 2009, VKM 2416, strain v1c_Sn-red

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFB79208.1	SFB97510.1	SAMN05660443_0154	SAMN05660443_0962	Diguanylate cyclase (GGDEF) domain-containing protein.	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	0.626
SFB79208.1	SFC03020.1	SAMN05660443_0154	SAMN05660443_1220	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.563
SFB79208.1	SFC31150.1	SAMN05660443_0154	SAMN05660443_2191	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.894
SFB88588.1	SFB97510.1	SAMN05660443_0729	SAMN05660443_0962	Diguanylate cyclase (GGDEF) domain-containing protein.	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	0.787
SFB88588.1	SFC03020.1	SAMN05660443_0729	SAMN05660443_1220	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.715
SFB88588.1	SFC31150.1	SAMN05660443_0729	SAMN05660443_2191	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.933
SFB97471.1	SFB97498.1	SAMN05660443_0960	SAMN05660443_0961	Metallo-beta-lactamase superfamily protein.	Metallo-beta-lactamase superfamily protein.	0.577
SFB97471.1	SFB97510.1	SAMN05660443_0960	SAMN05660443_0962	Metallo-beta-lactamase superfamily protein.	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	0.591
SFB97498.1	SFB97471.1	SAMN05660443_0961	SAMN05660443_0960	Metallo-beta-lactamase superfamily protein.	Metallo-beta-lactamase superfamily protein.	0.577
SFB97498.1	SFB97510.1	SAMN05660443_0961	SAMN05660443_0962	Metallo-beta-lactamase superfamily protein.	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	0.734
SFB97510.1	SFB79208.1	SAMN05660443_0962	SAMN05660443_0154	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Diguanylate cyclase (GGDEF) domain-containing protein.	0.626
SFB97510.1	SFB88588.1	SAMN05660443_0962	SAMN05660443_0729	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Diguanylate cyclase (GGDEF) domain-containing protein.	0.787
SFB97510.1	SFB97471.1	SAMN05660443_0962	SAMN05660443_0960	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Metallo-beta-lactamase superfamily protein.	0.591
SFB97510.1	SFB97498.1	SAMN05660443_0962	SAMN05660443_0961	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Metallo-beta-lactamase superfamily protein.	0.734
SFB97510.1	SFC03020.1	SAMN05660443_0962	SAMN05660443_1220	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Diguanylate cyclase (GGDEF) domain-containing protein.	0.679
SFB97510.1	SFC12379.1	SAMN05660443_0962	SAMN05660443_1505	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Hypothetical protein.	0.622
SFB97510.1	SFC31150.1	SAMN05660443_0962	SAMN05660443_2191	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.604
SFB97510.1	SFC33546.1	SAMN05660443_0962	SAMN05660443_2331	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Adenylate cyclase.	0.633
SFB97510.1	SFC41581.1	SAMN05660443_0962	SAMN05660443_2590	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Hypothetical protein.	0.609
SFB97510.1	SFC41605.1	SAMN05660443_0962	SAMN05660443_2591	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).	Hypothetical protein.	0.600