STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC14107.1dTDP-4-dehydrorhamnose 3,5-epimerase. (134 aa)    
Predicted Functional Partners:
SFC14152.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.998
SFC14125.1
Acetyltransferase (isoleucine patch superfamily).
     0.988
SFC14295.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.843
SFC14088.1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.813
SFC13895.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.726
SFC14067.1
Protein of unknown function.
       0.707
SFC14208.1
Glycosyltransferase involved in cell wall bisynthesis.
     
 0.689
SFC13915.1
4-hydroxy 2-oxovalerate aldolase.
 
   
 0.682
SFC11820.1
Cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 0.674
SFC14247.1
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
    0.671
Your Current Organism:
Marinospirillum celere
NCBI taxonomy Id: 1122252
Other names: DSM 18438, LMG 24610, LMG:24610, M. celere, Marinospirillum celere Namsaraev et al. 2009, VKM 2416, strain v1c_Sn-red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.