SFC15050.1 protein (Marinospirillum celere) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFC15050.1

Protein of unknown function. (275 aa)

Predicted Functional Partners:

SFC15078.1

0.824

SFC15128.1

0.815

SFC15005.1

0.776

SFC15021.1

0.773

SFC15145.1

0.679

nadK

0.673

SFC15194.1

0.599

SFC15211.1

0.458

Your Current Organism:

Marinospirillum celere

NCBI taxonomy Id: 1122252
Other names: DSM 18438, LMG 24610, LMG:24610, M. celere, Marinospirillum celere Namsaraev et al. 2009, VKM 2416, strain v1c_Sn-red

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFC15005.1	SFC15021.1	SAMN05660443_1627	SAMN05660443_1628	Translocation and assembly module TamB.	Autotransporter secretion outer membrane protein TamA.	0.997
SFC15005.1	SFC15050.1	SAMN05660443_1627	SAMN05660443_1629	Translocation and assembly module TamB.	Protein of unknown function.	0.776
SFC15005.1	SFC15078.1	SAMN05660443_1627	SAMN05660443_1630	Translocation and assembly module TamB.	Hypothetical protein.	0.773
SFC15005.1	SFC15128.1	SAMN05660443_1627	SAMN05660443_1631	Translocation and assembly module TamB.	GlpG protein.	0.773
SFC15005.1	SFC15145.1	SAMN05660443_1627	SAMN05660443_1632	Translocation and assembly module TamB.	Calcineurin-like phosphoesterase.	0.608
SFC15005.1	SFC15194.1	SAMN05660443_1627	SAMN05660443_1634	Translocation and assembly module TamB.	Opacity protein.	0.599
SFC15005.1	SFC15211.1	SAMN05660443_1627	SAMN05660443_1635	Translocation and assembly module TamB.	Carboxylate/amino acid/amine transporter.	0.624
SFC15005.1	nadK	SAMN05660443_1627	SAMN05660443_1633	Translocation and assembly module TamB.	NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.614
SFC15021.1	SFC15005.1	SAMN05660443_1628	SAMN05660443_1627	Autotransporter secretion outer membrane protein TamA.	Translocation and assembly module TamB.	0.997
SFC15021.1	SFC15050.1	SAMN05660443_1628	SAMN05660443_1629	Autotransporter secretion outer membrane protein TamA.	Protein of unknown function.	0.773
SFC15021.1	SFC15078.1	SAMN05660443_1628	SAMN05660443_1630	Autotransporter secretion outer membrane protein TamA.	Hypothetical protein.	0.773
SFC15021.1	SFC15128.1	SAMN05660443_1628	SAMN05660443_1631	Autotransporter secretion outer membrane protein TamA.	GlpG protein.	0.773
SFC15021.1	SFC15145.1	SAMN05660443_1628	SAMN05660443_1632	Autotransporter secretion outer membrane protein TamA.	Calcineurin-like phosphoesterase.	0.608
SFC15021.1	SFC15194.1	SAMN05660443_1628	SAMN05660443_1634	Autotransporter secretion outer membrane protein TamA.	Opacity protein.	0.610
SFC15021.1	SFC15211.1	SAMN05660443_1628	SAMN05660443_1635	Autotransporter secretion outer membrane protein TamA.	Carboxylate/amino acid/amine transporter.	0.623
SFC15021.1	nadK	SAMN05660443_1628	SAMN05660443_1633	Autotransporter secretion outer membrane protein TamA.	NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.599
SFC15050.1	SFC15005.1	SAMN05660443_1629	SAMN05660443_1627	Protein of unknown function.	Translocation and assembly module TamB.	0.776
SFC15050.1	SFC15021.1	SAMN05660443_1629	SAMN05660443_1628	Protein of unknown function.	Autotransporter secretion outer membrane protein TamA.	0.773
SFC15050.1	SFC15078.1	SAMN05660443_1629	SAMN05660443_1630	Protein of unknown function.	Hypothetical protein.	0.824
SFC15050.1	SFC15128.1	SAMN05660443_1629	SAMN05660443_1631	Protein of unknown function.	GlpG protein.	0.815