STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC18729.1ImcF-related N-terminal domain-containing protein. (1142 aa)    
Predicted Functional Partners:
SFC18744.1
Type VI secretion system protein ImpC.
 
 
 0.997
SFC18690.1
Type VI secretion system protein ImpJ.
 
 
 0.982
SFC18832.1
Type VI secretion system protein ImpH.
 
 
 0.981
SFC18606.1
Type VI secretion system protein ImpC.
 
 
 0.979
SFC18707.1
Type VI secretion system protein ImpK.
 
 
 0.977
SFC18767.1
Type VI secretion system secreted protein Hcp.
 
 
 0.975
SFC18807.1
Type VI secretion protein, VC_A0110 family.
 
  
 0.971
SFC18582.1
Type VI secretion system protein ImpB.
 
 
 0.966
SFC18628.1
Type VI secretion system secreted protein Hcp.
 
 
 0.959
SFC18866.1
Rhs element Vgr protein.
 
  
 0.933
Your Current Organism:
Marinospirillum celere
NCBI taxonomy Id: 1122252
Other names: DSM 18438, LMG 24610, LMG:24610, M. celere, Marinospirillum celere Namsaraev et al. 2009, VKM 2416, strain v1c_Sn-red
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.