STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traNBacteroides conjugative transposon TraN protein. (295 aa)    
Predicted Functional Partners:
traK
Bacteroides conjugative transposon TraK protein.
 
   
 0.940
traM
Bacteroides conjugative transposon TraM protein.
 
   
 0.940
traJ-2
Bacteroides conjugative transposon TraJ protein.
 
   
 0.931
SIS27849.1
Protein of unknown function.
 
     0.930
traG
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.922
SIS27844.1
Protein of unknown function.
 
     0.917
SIS27840.1
Protein of unknown function.
 
   
 0.913
traK-2
Bacteroides conjugative transposon TraK protein.
 
   
 0.799
SIS27816.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
 
 0.797
SIS27979.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   0.794
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.