STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS28900.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
SIS28904.1
Membrane associated serine protease, rhomboid family.
       0.757
SIS28890.1
Topoisomerase-4 subunit A.
       0.727
SIS28888.1
Hypothetical protein.
       0.722
SIS28907.1
Helix-turn-helix domain-containing protein.
       0.657
SIS28885.1
Topoisomerase-4 subunit B.
       0.515
SIS28911.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.408
SIS28915.1
Nucleoside-diphosphate-sugar epimerase.
       0.408
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.