Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PdeM | SIS29763.1 | SAMN05421768_101762 | SAMN05421768_101758 | Putative phosphoesterase. | Putative mRNA 3-end processing factor. | 0.898 |
PdeM | SIS29767.1 | SAMN05421768_101762 | SAMN05421768_101759 | Putative phosphoesterase. | DNA ligase-1. | 0.911 |
PdeM | SIS29770.1 | SAMN05421768_101762 | SAMN05421768_101760 | Putative phosphoesterase. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.918 |
SIS29763.1 | PdeM | SAMN05421768_101758 | SAMN05421768_101762 | Putative mRNA 3-end processing factor. | Putative phosphoesterase. | 0.898 |
SIS29763.1 | SIS29767.1 | SAMN05421768_101758 | SAMN05421768_101759 | Putative mRNA 3-end processing factor. | DNA ligase-1. | 0.997 |
SIS29763.1 | SIS29770.1 | SAMN05421768_101758 | SAMN05421768_101760 | Putative mRNA 3-end processing factor. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.965 |
SIS29763.1 | SIS39054.1 | SAMN05421768_101758 | SAMN05421768_106194 | Putative mRNA 3-end processing factor. | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). | 0.797 |
SIS29763.1 | SIS53452.1 | SAMN05421768_101758 | SAMN05421768_109177 | Putative mRNA 3-end processing factor. | DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.684 |
SIS29763.1 | gpmI | SAMN05421768_101758 | SAMN05421768_106216 | Putative mRNA 3-end processing factor. | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.801 |
SIS29763.1 | polA | SAMN05421768_101758 | SAMN05421768_107370 | Putative mRNA 3-end processing factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.736 |
SIS29763.1 | rpoA | SAMN05421768_101758 | SAMN05421768_103589 | Putative mRNA 3-end processing factor. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.664 |
SIS29763.1 | rpoB | SAMN05421768_101758 | SAMN05421768_105307 | Putative mRNA 3-end processing factor. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.693 |
SIS29763.1 | sbcD | SAMN05421768_101758 | SAMN05421768_10719 | Putative mRNA 3-end processing factor. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.671 |
SIS29767.1 | PdeM | SAMN05421768_101759 | SAMN05421768_101762 | DNA ligase-1. | Putative phosphoesterase. | 0.911 |
SIS29767.1 | SIS29763.1 | SAMN05421768_101759 | SAMN05421768_101758 | DNA ligase-1. | Putative mRNA 3-end processing factor. | 0.997 |
SIS29767.1 | SIS29770.1 | SAMN05421768_101759 | SAMN05421768_101760 | DNA ligase-1. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.964 |
SIS29767.1 | polA | SAMN05421768_101759 | SAMN05421768_107370 | DNA ligase-1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.905 |
SIS29767.1 | rpoA | SAMN05421768_101759 | SAMN05421768_103589 | DNA ligase-1. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.548 |
SIS29767.1 | rpoB | SAMN05421768_101759 | SAMN05421768_105307 | DNA ligase-1. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.554 |
SIS29767.1 | sbcD | SAMN05421768_101759 | SAMN05421768_10719 | DNA ligase-1. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.665 |
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