STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS31617.1Outer membrane protein beta-barrel family protein. (929 aa)    
Predicted Functional Partners:
SIS31616.1
SH3 domain-containing protein.
       0.715
SIS31615.1
Hyperosmotically inducible protein.
       0.700
SIS28362.1
SusD family protein.
  
 
   0.542
SIS28359.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.515
SIS36885.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.501
SIS56968.1
Coenzyme Q (ubiquinone) biosynthesis protein Coq4.
  
     0.501
SIS36902.1
Hypothetical protein.
  
     0.483
SIS40291.1
Tetratricopeptide repeat-containing protein.
  
     0.480
SIS29550.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
     0.466
SIS30951.1
Hypothetical protein.
  
     0.459
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.