STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCRod shape-determining protein MreC. (284 aa)    
Predicted Functional Partners:
SIS33501.1
Rod shape-determining protein MreB.
  
 
 0.972
SIS33512.1
Penicillin-binding protein 2.
 
 
 0.953
SIS33516.1
Rod shape determining protein RodA; Belongs to the SEDS family.
 
  
 0.896
SIS33508.1
Rod shape-determining protein MreD.
 
    0.888
SIS32768.1
Cell division protein FtsI (penicillin-binding protein 3).
 
 
 0.753
SIS29465.1
Protein of unknown function.
  
    0.746
SIS40410.1
Protein of unknown function.
  
    0.744
SIS32795.1
Cell division protein FtsQ.
 
  
 0.743
SIS38482.1
Surface antigen.
  
  
 0.728
SIS33462.1
Penicillin-binding protein 1A.
  
 
 0.718
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.