STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS36608.1Phosphate transport system substrate-binding protein. (290 aa)    
Predicted Functional Partners:
SIS36615.1
Biopolymer transport protein ExbD.
 
    0.906
SIS36613.1
Biopolymer transport protein ExbD.
 
    0.903
SIS36612.1
Protein TonB.
 
     0.878
SIS36617.1
Biopolymer transport protein ExbB.
 
  
 0.878
SIS36606.1
Hypothetical protein; Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain.
 
   
 0.870
SIS36610.1
Short repeat of unknown function.
       0.788
SIS36644.1
Biopolymer transport protein ExbD/TolR.
 
    0.781
SIS59701.1
Protein TonB.
 
     0.730
SIS36073.1
OmpA-OmpF porin, OOP family.
 
 
 0.669
SIS35431.1
Hypothetical protein.
  
     0.600
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.