STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS36915.1TonB-linked outer membrane protein, SusC/RagA family. (963 aa)    
Predicted Functional Partners:
SIS36912.1
Susd and RagB outer membrane lipoprotein.
 
   
 0.943
SIS36889.1
Starch-binding associating with outer membrane.
 
   
 0.689
SIS33631.1
Susd and RagB outer membrane lipoprotein.
   
 0.655
SIS28362.1
SusD family protein.
 
     0.544
SIS30715.1
SusD family protein.
 
     0.501
SIS46708.1
SusD family protein.
 
     0.501
SIS39287.1
Starch-binding associating with outer membrane.
 
     0.497
SIS40300.1
Hypothetical protein.
  
     0.495
SIS61428.1
Starch-binding associating with outer membrane.
   
 0.494
SIS51548.1
Iron complex outermembrane recepter protein.
  
     0.482
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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