STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS48540.1Oxygen tolerance. (579 aa)    
Predicted Functional Partners:
SIS48546.1
Tetratricopeptide repeat-containing protein.
 
 
 0.945
SIS48560.1
Hypothetical protein.
 
   
 0.876
SIS48551.1
Ca-activated chloride channel family protein.
 
   
 0.805
SIS48566.1
Protein of unknown function DUF58.
 
  
 0.783
SIS48555.1
Ca-activated chloride channel family protein.
 
  
 0.779
SIS31240.1
Tetratricopeptide repeat-containing protein.
 
 
 0.768
SIS31247.1
Hypothetical protein.
 
   
 0.748
SIS51443.1
Ig-like domain-containing protein.
  
     0.683
SIS53582.1
Hypothetical protein.
  
     0.671
SIS48534.1
Multiple antibiotic resistance protein.
       0.650
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.