STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS46708.1SusD family protein. (487 aa)    
Predicted Functional Partners:
SIS46700.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.945
SIS33892.1
TonB-linked outer membrane protein, SusC/RagA family.
 
    0.783
SIS30712.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.774
SIS33911.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.766
SIS35530.1
Iron complex outermembrane recepter protein.
 
    0.691
SIS35533.1
Starch-binding associating with outer membrane.
  
     0.613
SIS30524.1
F5/8 type C domain-containing protein.
  
     0.589
SIS63876.1
F5/8 type C domain-containing protein.
  
     0.589
SIS28359.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.539
SIS28123.1
SusD family protein.
  
 
   0.520
Your Current Organism:
Chryseobacterium joostei
NCBI taxonomy Id: 112234
Other names: C. joostei, CCUG 46665, Chryseobacterium joostei Hugo et al. 2003 emend. Montero-Calasanz et al. 2014, DSM 16927, LMG 18212, LMG:18212, strain Ix 5a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.