STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF26278.1Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. (487 aa)    
Predicted Functional Partners:
SHF13586.1
HlyD family secretion protein.
 
   0.741
SHF40788.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.599
SHF26297.1
Transcriptional regulator, AraC family.
  
    0.521
SHE59542.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.519
SHF13566.1
HlyD membrane-fusion protein of T1SS.
  
   0.474
SHF26257.1
Transcriptional regulator, TetR family.
       0.464
SHF13372.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.459
SHE67887.1
Aminodeoxychorismate synthase, subunit I.
   
 
  0.427
SHF39623.1
Lactate dehydrogenase.
    
  0.422
Your Current Organism:
Seinonella peptonophila
NCBI taxonomy Id: 112248
Other names: ATCC 27302, DSM 44666, JCM 10113, KCTC 9740, S. peptonophila, Thermoactinomyces peptonophilus
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