STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF27754.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
SHF00707.1
Lecithin:cholesterol acyltransferase.
  
   0.828
SHE82432.1
Hypothetical protein.
   
   0.801
SHF27722.1
Aminoglycoside 6-adenylyltransferase.
 
     0.600
secD
Preprotein translocase subunit SecD/SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
   
  0.528
SHE42428.1
Cystathione beta-lyase.
   
 
  0.503
SHF02978.1
Hypothetical protein.
  
     0.502
SHF27738.1
Threonine/homoserine/homoserine lactone efflux protein.
       0.492
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.445
SHE85830.1
Serine protease Do.
    
 0.440
SHE95349.1
Hypothetical protein.
    
 0.440
Your Current Organism:
Seinonella peptonophila
NCBI taxonomy Id: 112248
Other names: ATCC 27302, DSM 44666, JCM 10113, KCTC 9740, S. peptonophila, Thermoactinomyces peptonophilus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.