STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF36555.1Uncharacterized membrane protein. (213 aa)    
Predicted Functional Partners:
SHF36533.1
Transcriptional regulator, ArsR family.
 
  
 0.969
SHF07866.1
Transcriptional regulator, ArsR family.
 
  
 0.799
SHF36578.1
TIGR02452 family protein.
       0.709
SHE94399.1
Transcriptional regulator, ArsR family.
 
  
 0.666
SHF19351.1
DNA-binding transcriptional regulator, ArsR family.
 
  
 0.654
SHF26048.1
DNA-binding transcriptional regulator, ArsR family.
 
  
 0.630
SHE89644.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.563
SHF36594.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
       0.532
SHF36516.1
Protein of unknown function.
       0.440
Your Current Organism:
Seinonella peptonophila
NCBI taxonomy Id: 112248
Other names: ATCC 27302, DSM 44666, JCM 10113, KCTC 9740, S. peptonophila, Thermoactinomyces peptonophilus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.